MSOAR2

Steps of MSOAR2

\subsection{File extensions} pep

\subsection{Compute sequence similarity} Input: G.pep, H.pep

Program: Blastp

Output: GH.blastp

\subsection{Determine gene families} Input: GH.blastp

Program: MCL

Output: GH.cluster

\subsection{Partition genes according to gene family} \subsection{Construct gene tree for each family and find inparalogs in TAGs}