Genome island boundary refinement

speaker: Wang Mengge event: RAS group meeting

Given rough GI region from window based method, compute a more accurate GI boundary

Possible approaches:

• structural features of GI
  • genes should not be cut apart
  • direct repeat on boundary
  • tDNA gene split apart by insert
• based on probability
  • HMM: native vs GI
  • MJSD used in finding recursive segmentation position on boundary