Bernt2008

CREATED: 200810200654 Title: An Algorithm for Inferring Mitogenome Rearrangements in a Phylogenetic Tree

• Common intervals of 2 gene orders
• strong common interval tree
• rearrangement operations on mitochondrial genome <-> corresponding strong interval tree patterns
• CREx identifies the scenario and heuristically determine rearrangement scenario
• TreeREx: to find rearrangements on a given phylogenetic tree using pairwise CREx scenarios
• Tested on mitochondria genomes from ** Echinoderm ** Teleosts (Miya et al. 2003, Inone et al. 2003) ** Gastropoda (Grande at al. 2008)